GMAP version called with args: gmap.avx2 -D /home/genome_files/CTAT_Library/ctat_genome_lib_build_dir -d ref_genome.fa.gmap /homeresults/TrinityFusion_out/trinity_discasm/ -f 3 -n 0 -x 30 -t 55Ĭhecking compiler assumptions for SSE2: 6B8B4567 327B23C6 xor=59F066A1Ĭhecking compiler assumptions for SSE4.1: -103 -58 max=198 => compiler zero extendsĬhecking compiler options for SSE4.2: 6B8B4567 _builtin_clz=1 _builtin_ctz=0 _mm_popcnt_u32=17 _builtin_popcount=17 * Running CMD: gmap -D /home/genome_files/CTAT_Library/ctat_genome_lib_build_dir -d ref_genome.fa.gmap /homeresults/TrinityFusion_out/trinity_discasm/ -f 3 -n 0 -x 30 -t 55 > /homeresults/TrinityFusion_out/trinity_fusion-UC_gmap/gmap_fusion_intermediates_dir/3 Running CMD: /home/software/TrinityFusion-v0.3.5/GMAP-fusion/GMAP-fusion -T trinity_discasm/ -genome_lib_dir /home/genome_files/CTAT_Library/ctat_genome_lib_build_dir -left_fq /homeresults/reads/SRR13626503_1_trim.fastq -right_fq /homeresults/reads/SRR13626503_2_trim.fastq -CPU 55 -L 30 -min_J 1 -min_sumJS 2 -min_novel_junction_support 3 -split_breakpoint_extend_length 25 -max_fuzzy_overlap 12 -o trinity_fusion-UC_gmapĮrror encountered::
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